sample_id.util module¶

sample_id.util.class_attributes(cls, filter_types=(<class 'int'>, <class 'float'>, <class 'bool'>, <class 'str'>))[source]¶

sample_id.util.class_repr(cls, filter_types=[], **kwargs)[source]¶

sample_id.util.filesize(filename)[source]¶

Human readable string representation of filesize

sample_id.util.gunzip_file(input_filename, output_filename, blocksize=5242880, threads=None)[source]¶

Gzip a file using mgzip for multithreading.

sample_id.util.gzip_file(output_filename, input_filename, compress_level=9, blocksize=5242880, threads=None)[source]¶

Gzip a file using mgzip for multithreading.

sample_id.util.human_bytes(bytes)[source]¶

Human readable string representation of bytes

sample_id.util.kv_string(dicts)[source]¶

sample_id.util.tar_files(output_filename, files, file_arcnames, delete_added=True)[source]¶

Tar files.

sample_id.util.untar(input_tarfile, members, output_dir)[source]¶

Untar an tarball.